Reactions
Deriving ordinary differential equations from a reaction system, and its stoichiometric matrices.
| Operation | Kind | Bindings | Summary |
|---|---|---|---|
derive_odes | function | Julia, TypeScript, Python, Rust, Go | Generate an ODE model from a reaction system using standard mass action kinetics. |
lower_reactions_to_equations | function | Julia, Rust | Produce the ODE equations induced by a set of reactions using standard mass-action kinetics: d[X]/dt = Σ (stoich_ij * rate_j). |
product_matrix | function | TypeScript, Python | Compute product stoichiometric matrix from a reaction system |
stoichiometric_matrix | function | Julia, TypeScript, Python, Rust, Go | Compute the net stoichiometric matrix (species × reactions). |
substrate_matrix | function | TypeScript, Python | Compute substrate stoichiometric matrix from a reaction system |